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Gene, Transcriptome, Protein, Pathway or Disease. 

Gene basic information

LiverAtlas Gene ID

HuLG004386

Entrez Gene ID

6470

Official Gene Symbol

SHMT1

Synonyms

CSHMT|MGC15229|MGC24556|SHMT

Gene name

serine hydroxymethyltransferase 1 (soluble)

Gene Type

protein-coding

Chromosome

17

Genomics Location

17p11.2

Known cancer genes

Yes

Protein products

Uncharacterized protein

Serine hydroxymethyltransferase

Serine hydroxymethyltransferase, cytosolic

Cytosolic serine hydroxymethyltransferase

Cytosolic serine hydroxymethyltransferase

Related liver disease name

Hepatocellular carcinoma

Database cross reference

HGNC:10850
MIM:182144
Ensembl:ENSG00000176974
HPRD:01643
RefSeq Genomic nucleotide accession:AC_000060
RefSeq Genomic nucleotide gi:89161195

Liver relevance

HCC significant genes

Yes/No

Yes

Evidence

EHCO HCC.net OncoDB

Quality score

 

Ontology annotation

GO ID

GO annotation

GO:0004372

glycine hydroxymethyltransferase activity

GO:0005634

nucleus

GO:0005737

cytoplasm

GO:0005739

mitochondrion

GO:0005829

cytosol

GO:0006565

L-serine catabolic process

GO:0006730

one-carbon metabolic process

GO:0006766

vitamin metabolic process

GO:0006767

water-soluble vitamin metabolic process

GO:0008732

L-allo-threonine aldolase activity

GO:0009113

purine base biosynthetic process

GO:0016597

amino acid binding

GO:0016740

transferase activity

GO:0019264

glycine biosynthetic process from serine

GO:0030170

pyridoxal phosphate binding

GO:0034641

cellular nitrogen compound metabolic process

GO:0042803

protein homodimerization activity

GO:0045329

carnitine biosynthetic process

GO:0046655

folic acid metabolic process

GO:0051262

protein tetramerization

GO:0051289

protein homotetramerization